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Course information

Time and location

Wednesday 12:55 - 15:40

Room 304, building 1, Dongzhongyuan

Office Hour

Monday 2:00PM to 3:00PM

Room 221, Buidling 4, School of Life Sciences

Syllabus

Week Date Lecturer Topics Labs & Guides
1 Feb. 28 No class
2 March 7 Chaochun Wei Introduction to Omics Big Data Lecture materials: Labs:
3 March 14 Chaochun Wei
  • Chapter 1: Probability, Statistics and Information Theory
  • Chapter 2: Algorithm Complexity Analysis
  • Chapter 3: Dynamic Programming
Lecture materials: Homework2:
4 March 21 Chaochun Wei
  • Chapter 4: Sequence Comparison
  • Chapter 5: Sequencing technologies
Lecture materials: Homework3:
5 March 28 Chaochun Wei
  • Chapter 6: Hidden Markov Models
  • Chpater 7: Gene prediction
Lecture materials: Homework4:
6 April 4 Chaochun Wei
  • Chapter 8: Multiple sequence alignment
  • Chpater 9: Metagenomics
Lecture materials: Project 1:
18 Jun 25 - July 2
  • Final Exam
The final exam is here: A pdf version is also available here: Note: if you had downloaded the exam file before 15:20, June 25, 2018, you need to redownload it by clicking the link above. There was a typo in the previous version for question 5, which has been fixed.
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  • Paper list for student presentations

    If you have a paper that you want to be included in this list, please contact Dr. Wei at ccwei@sjtu.edu.cn.

    Links

    New homework submit system

    Dear student,

    You can go this new website to submit your homework. Your username is your student ID. Please contact TA in case you need your password.


    No SSH? Download this SSH.zip file.
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    References:

     

    ©2017 Chaochun Wei