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Gene Information

Basic Gene Information

ID source chrom start end strand CDS length exon number gene ID visualization
1708 irgsp1_rep chr01 15146089 15152275 + 2241 18 Os01g0369200

Gene Categorization (Help)

Core gene Yes
Candidate core gene No
Distributed gene No
Subspecies-unbalanced gene No
Indica-dominant gene No
Japonica-dominant gene No
Subspecies-specific gene No
Indica-specific gene No
Japonica-specific gene No
AUS-specific gene No
ARO-specific gene No
Subgroup-unbalanced gene No
Indica-subgroup-unbalanced gene No
Japonica-subgroup-unbalanced gene No
Random gene No
Gene age PS1

Gene Family

GF533 Core Gene Family

Gene Distribution (Help)

This gene presents in all high-quality rice accessions.

Gene Presence Frequency

The information about subspecies and subgroups.

Gene Ontology

GO:0000151ubiquitin ligase complex
GO:0000278mitotic cell cycle
GO:0000794condensed nuclear chromosome
GO:0005515protein binding
GO:0005623cell
GO:0005634nucleus
GO:0005737cytoplasm
GO:0005819spindle
GO:0005829cytosol
GO:0006396RNA processing
GO:0006486protein glycosylation
GO:0006499N-terminal protein myristoylation
GO:0006511ubiquitin-dependent protein catabolic process
GO:0006888ER to Golgi vesicle-mediated transport
GO:0007062sister chromatid cohesion
GO:0009524phragmoplast
GO:0009733response to auxin
GO:0009734auxin-activated signaling pathway
GO:0009753response to jasmonic acid
GO:0009793embryo development ending in seed dormancy
GO:0009867jasmonic acid mediated signaling pathway
GO:0009873ethylene-activated signaling pathway
GO:0009880embryonic pattern specification
GO:0010072primary shoot apical meristem specification
GO:0010087phloem or xylem histogenesis
GO:0010162seed dormancy process
GO:0010265SCF complex assembly
GO:0010431seed maturation
GO:0010564regulation of cell cycle process
GO:0016567protein ubiquitination
GO:0031625ubiquitin protein ligase binding
GO:0042752regulation of circadian rhythm
GO:0043090amino acid import
GO:0045595regulation of cell differentiation
GO:0048316seed development
GO:0048366leaf development
GO:0048825cotyledon development
GO:0051301cell division

CDS(Coding DNA Sequence)

Protein Sequence

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Copyright © 2015-2018 The laboratory of computational genomics and metagenomics in Shanghai Jiao Tong University. Institute of Crop Sciences, Chinese Academy of Agricultural Sciences. All Rights Reserved