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Gene Information

Basic Gene Information

ID source chrom start end strand CDS length exon number gene ID visualization
3038 irgsp1_rep chr01 29620958 29622314 + 1017 2 Os01g0713200

Gene Categorization (Help)

Core gene Yes
Candidate core gene No
Distributed gene No
Subspecies-unbalanced gene No
Indica-dominant gene No
Japonica-dominant gene No
Subspecies-specific gene No
Indica-specific gene No
Japonica-specific gene No
AUS-specific gene No
ARO-specific gene No
Subgroup-unbalanced gene No
Indica-subgroup-unbalanced gene No
Japonica-subgroup-unbalanced gene No
Random gene No
Gene age PS1

Gene Family

GF29 Core Gene Family

Gene Distribution (Help)

This gene presents in all high-quality rice accessions.

Gene Presence Frequency

The information about subspecies and subgroups.

Gene Ontology

GO:0000165MAPK cascade
GO:0002679respiratory burst involved in defense response
GO:0004338glucan exo-1,3-beta-glucosidase activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005515protein binding
GO:0005618cell wall
GO:0005623cell
GO:0005773vacuole
GO:0005975carbohydrate metabolic process
GO:0006612protein targeting to membrane
GO:0008810cellulase activity
GO:0009409response to cold
GO:0009507chloroplast
GO:0009595detection of biotic stimulus
GO:0009627systemic acquired resistance
GO:0009697salicylic acid biosynthetic process
GO:0009718anthocyanin-containing compound biosynthetic process
GO:0009814defense response, incompatible interaction
GO:0009862systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009867jasmonic acid mediated signaling pathway
GO:0010200response to chitin
GO:0010310regulation of hydrogen peroxide metabolic process
GO:0010363regulation of plant-type hypersensitive response
GO:0031347regulation of defense response
GO:0031348negative regulation of defense response
GO:0034976response to endoplasmic reticulum stress
GO:0042742defense response to bacterium
GO:0042973glucan endo-1,3-beta-D-glucosidase activity
GO:0043069negative regulation of programmed cell death
GO:0043900regulation of multi-organism process
GO:0045088regulation of innate immune response
GO:0048046apoplast
GO:0050832defense response to fungus
GO:0061025membrane fusion

CDS(Coding DNA Sequence)

Protein Sequence

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Copyright © 2015-2018 The laboratory of computational genomics and metagenomics in Shanghai Jiao Tong University. Institute of Crop Sciences, Chinese Academy of Agricultural Sciences. All Rights Reserved