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Gene Information

Basic Gene Information

ID source chrom start end strand CDS length exon number gene ID visualization
3198 irgsp1_rep chr01 30630841 30634318 + 1611 10 Os01g0734466

Gene Categorization (Help)

Core gene Yes
Candidate core gene No
Distributed gene No
Subspecies-unbalanced gene No
Indica-dominant gene No
Japonica-dominant gene No
Subspecies-specific gene No
Indica-specific gene No
Japonica-specific gene No
AUS-specific gene No
ARO-specific gene No
Subgroup-unbalanced gene No
Indica-subgroup-unbalanced gene No
Japonica-subgroup-unbalanced gene No
Random gene No
Gene age PS1

Gene Family

GF477 Core Gene Family

Gene Distribution (Help)

This gene presents in all high-quality rice accessions.

Gene Presence Frequency

The information about subspecies and subgroups.

Gene Ontology

GO:0000165MAPK cascade
GO:0002679respiratory burst involved in defense response
GO:0004601peroxidase activity
GO:0005515protein binding
GO:0005623cell
GO:0005886plasma membrane
GO:0005887integral component of plasma membrane
GO:0006612protein targeting to membrane
GO:0006952defense response
GO:0007154cell communication
GO:0007165signal transduction
GO:0007231osmosensory signaling pathway
GO:0009409response to cold
GO:0009414response to water deprivation
GO:0009611response to wounding
GO:0009627systemic acquired resistance
GO:0009697salicylic acid biosynthetic process
GO:0009723response to ethylene
GO:0009733response to auxin
GO:0009737response to abscisic acid
GO:0009738abscisic acid-activated signaling pathway
GO:0009753response to jasmonic acid
GO:0009862systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009867jasmonic acid mediated signaling pathway
GO:0009873ethylene-activated signaling pathway
GO:0010119regulation of stomatal movement
GO:0010228vegetative to reproductive phase transition of meristem
GO:0010363regulation of plant-type hypersensitive response
GO:0016021integral component of membrane
GO:0016174NAD(P)H oxidase activity
GO:0016926protein desumoylation
GO:0030968endoplasmic reticulum unfolded protein response
GO:0031348negative regulation of defense response
GO:0033500carbohydrate homeostasis
GO:0035556intracellular signal transduction
GO:0042538hyperosmotic salinity response
GO:0043069negative regulation of programmed cell death
GO:0050665hydrogen peroxide biosynthetic process
GO:0050832defense response to fungus
GO:0052542defense response by callose deposition
GO:0055114oxidation-reduction process
GO:0072593reactive oxygen species metabolic process

CDS(Coding DNA Sequence)

Protein Sequence

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Copyright © 2015-2018 The laboratory of computational genomics and metagenomics in Shanghai Jiao Tong University. Institute of Crop Sciences, Chinese Academy of Agricultural Sciences. All Rights Reserved