;

Gene Information

Basic Gene Information

ID source chrom start end strand CDS length exon number gene ID visualization
3826 irgsp1_rep chr01 35347982 35350546 + 1668 5 Os01g0826400

Gene Categorization (Help)

Core gene Yes
Candidate core gene No
Distributed gene No
Subspecies-unbalanced gene No
Indica-dominant gene No
Japonica-dominant gene No
Subspecies-specific gene No
Indica-specific gene No
Japonica-specific gene No
AUS-specific gene No
ARO-specific gene No
Subgroup-unbalanced gene No
Indica-subgroup-unbalanced gene No
Japonica-subgroup-unbalanced gene No
Random gene No
Gene age PS2

Gene Family

GF293 Core Gene Family

Gene Distribution (Help)

This gene presents in all high-quality rice accessions.

Gene Presence Frequency

The information about subspecies and subgroups.

Gene Ontology

GO:0000165MAPK cascade
GO:0002679respiratory burst involved in defense response
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0005515protein binding
GO:0005623cell
GO:0005634nucleus
GO:0006351transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
GO:0006612protein targeting to membrane
GO:0006970response to osmotic stress
GO:0009408response to heat
GO:0009409response to cold
GO:0009414response to water deprivation
GO:0009595detection of biotic stimulus
GO:0009651response to salt stress
GO:0009697salicylic acid biosynthetic process
GO:0009862systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009863salicylic acid mediated signaling pathway
GO:0009867jasmonic acid mediated signaling pathway
GO:0010120camalexin biosynthetic process
GO:0010200response to chitin
GO:0010310regulation of hydrogen peroxide metabolic process
GO:0010363regulation of plant-type hypersensitive response
GO:0010508positive regulation of autophagy
GO:0031348negative regulation of defense response
GO:0034605cellular response to heat
GO:0035556intracellular signal transduction
GO:0042742defense response to bacterium
GO:0043069negative regulation of programmed cell death
GO:0043900regulation of multi-organism process
GO:0050832defense response to fungus
GO:0061025membrane fusion
GO:0070370cellular heat acclimation

CDS(Coding DNA Sequence)

Protein Sequence

If you don't know how to start, examples about how to use this website are provided. If you need further help, feel free to contact us.

Copyright © 2015-2018 The laboratory of computational genomics and metagenomics in Shanghai Jiao Tong University. Institute of Crop Sciences, Chinese Academy of Agricultural Sciences. All Rights Reserved