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Gene Information

Basic Gene Information

ID source chrom start end strand CDS length exon number gene ID visualization
4146 irgsp1_rep chr01 37727434 37737822 + 1497 10 Os01g0870300

Gene Categorization (Help)

Core gene Yes
Candidate core gene No
Distributed gene No
Subspecies-unbalanced gene No
Indica-dominant gene No
Japonica-dominant gene No
Subspecies-specific gene No
Indica-specific gene No
Japonica-specific gene No
AUS-specific gene No
ARO-specific gene No
Subgroup-unbalanced gene No
Indica-subgroup-unbalanced gene No
Japonica-subgroup-unbalanced gene No
Random gene No
Gene age PS1

Gene Family

GF828 Core Gene Family

Gene Distribution (Help)

This gene presents in all high-quality rice accessions.

Gene Presence Frequency

The information about subspecies and subgroups.

Gene Ontology

GO:0000165MAPK cascade
GO:0002237response to molecule of bacterial origin
GO:0005623cell
GO:0005737cytoplasm
GO:0005886plasma membrane
GO:0006612protein targeting to membrane
GO:0006820anion transport
GO:0006862nucleotide transport
GO:0006888ER to Golgi vesicle-mediated transport
GO:0006995cellular response to nitrogen starvation
GO:0007154cell communication
GO:0008519ammonium transmembrane transporter activity
GO:0009409response to cold
GO:0009506plasmodesma
GO:0009581detection of external stimulus
GO:0009595detection of biotic stimulus
GO:0009624response to nematode
GO:0009627systemic acquired resistance
GO:0009697salicylic acid biosynthetic process
GO:0009738abscisic acid-activated signaling pathway
GO:0009744response to sucrose
GO:0009749response to glucose
GO:0009750response to fructose
GO:0009862systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009863salicylic acid mediated signaling pathway
GO:0009867jasmonic acid mediated signaling pathway
GO:0010200response to chitin
GO:0010310regulation of hydrogen peroxide metabolic process
GO:0010363regulation of plant-type hypersensitive response
GO:0015398high-affinity secondary active ammonium transmembrane transporter activity
GO:0015695organic cation transport
GO:0015696ammonium transport
GO:0015802basic amino acid transport
GO:0016021integral component of membrane
GO:0030968endoplasmic reticulum unfolded protein response
GO:0031347regulation of defense response
GO:0031348negative regulation of defense response
GO:0042742defense response to bacterium
GO:0043069negative regulation of programmed cell death
GO:0043090amino acid import
GO:0043269regulation of ion transport
GO:0043900regulation of multi-organism process
GO:0050832defense response to fungus
GO:0051707response to other organism
GO:0061025membrane fusion
GO:0072488ammonium transmembrane transport

CDS(Coding DNA Sequence)

Protein Sequence

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Copyright © 2015-2018 The laboratory of computational genomics and metagenomics in Shanghai Jiao Tong University. Institute of Crop Sciences, Chinese Academy of Agricultural Sciences. All Rights Reserved