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Gene Information

Basic Gene Information

ID source chrom start end strand CDS length exon number gene ID visualization
4433 irgsp1_rep chr01 39595682 39606227 - 4956 28 Os01g0909200

Gene Categorization (Help)

Core gene Yes
Candidate core gene No
Distributed gene No
Subspecies-unbalanced gene No
Indica-dominant gene No
Japonica-dominant gene No
Subspecies-specific gene No
Indica-specific gene No
Japonica-specific gene No
AUS-specific gene No
ARO-specific gene No
Subgroup-unbalanced gene No
Indica-subgroup-unbalanced gene No
Japonica-subgroup-unbalanced gene No
Random gene No
Gene age PS1

Gene Family

GF351 Core Gene Family

Gene Distribution (Help)

This gene presents in all high-quality rice accessions.

Gene Presence Frequency

The information about subspecies and subgroups.

Gene Ontology

GO:0000278mitotic cell cycle
GO:0000398mRNA splicing, via spliceosome
GO:0003723RNA binding
GO:0004386helicase activity
GO:0004525ribonuclease III activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0005634nucleus
GO:0005737cytoplasm
GO:0006306DNA methylation
GO:0006342chromatin silencing
GO:0006353DNA-templated transcription, termination
GO:0006355regulation of transcription, DNA-templated
GO:0006396RNA processing
GO:0007267cell-cell signaling
GO:0009616virus induced gene silencing
GO:0009640photomorphogenesis
GO:0009793embryo development ending in seed dormancy
GO:0009845seed germination
GO:0009909regulation of flower development
GO:0009933meristem structural organization
GO:0010050vegetative phase change
GO:0010162seed dormancy process
GO:0010182sugar mediated signaling pathway
GO:0010216maintenance of DNA methylation
GO:0010228vegetative to reproductive phase transition of meristem
GO:0010267production of ta-siRNAs involved in RNA interference
GO:0010599production of lsiRNA involved in RNA interference
GO:0016442RISC complex
GO:0016567protein ubiquitination
GO:0016569covalent chromatin modification
GO:0019915lipid storage
GO:0030422production of siRNA involved in RNA interference
GO:0031047gene silencing by RNA
GO:0035196production of miRNAs involved in gene silencing by miRNA
GO:0043687post-translational protein modification
GO:0045893positive regulation of transcription, DNA-templated
GO:0046872metal ion binding
GO:0050826response to freezing
GO:0051607defense response to virus
GO:0090501RNA phosphodiester bond hydrolysis
GO:0090502RNA phosphodiester bond hydrolysis, endonucleolytic

CDS(Coding DNA Sequence)

Protein Sequence

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Copyright © 2015-2018 The laboratory of computational genomics and metagenomics in Shanghai Jiao Tong University. Institute of Crop Sciences, Chinese Academy of Agricultural Sciences. All Rights Reserved