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Gene Information

Basic Gene Information

ID source chrom start end strand CDS length exon number gene ID visualization
5564 irgsp1_rep chr02 4120173 4127533 + 1866 19 Os02g0175400

Gene Categorization (Help)

Core gene Yes
Candidate core gene No
Distributed gene No
Subspecies-unbalanced gene No
Indica-dominant gene No
Japonica-dominant gene No
Subspecies-specific gene No
Indica-specific gene No
Japonica-specific gene No
AUS-specific gene No
ARO-specific gene No
Subgroup-unbalanced gene No
Indica-subgroup-unbalanced gene No
Japonica-subgroup-unbalanced gene No
Random gene No
Gene age PS1

Gene Family

GF633 Core Gene Family

Gene Distribution (Help)

This gene presents in all high-quality rice accessions.

Gene Presence Frequency

The information about subspecies and subgroups.

Gene Ontology

GO:0000325plant-type vacuole
GO:0000902cell morphogenesis
GO:0002020protease binding
GO:0005524ATP binding
GO:0005618cell wall
GO:0005739mitochondrion
GO:0005773vacuole
GO:0005774vacuolar membrane
GO:0005794Golgi apparatus
GO:0005829cytosol
GO:0005886plasma membrane
GO:0006007glucose catabolic process
GO:0006094gluconeogenesis
GO:0006096glycolytic process
GO:0006098pentose-phosphate shunt
GO:0006200obsolete ATP catabolic process
GO:0006816calcium ion transport
GO:0006833water transport
GO:0006972hyperosmotic response
GO:0007010cytoskeleton organization
GO:0007030Golgi organization
GO:0007033vacuole organization
GO:0009266response to temperature stimulus
GO:0009506plasmodesma
GO:0009507chloroplast
GO:0009555pollen development
GO:0009651response to salt stress
GO:0009941chloroplast envelope
GO:0010498proteasomal protein catabolic process
GO:0015991ATP hydrolysis coupled proton transport
GO:0015992proton transport
GO:0016020membrane
GO:0016049cell growth
GO:0033180proton-transporting V-type ATPase, V1 domain
GO:0046034ATP metabolic process
GO:0046686response to cadmium ion
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
GO:0046961proton-transporting ATPase activity, rotational mechanism
GO:0048046apoplast
GO:0048193Golgi vesicle transport

CDS(Coding DNA Sequence)

Protein Sequence

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Copyright © 2015-2018 The laboratory of computational genomics and metagenomics in Shanghai Jiao Tong University. Institute of Crop Sciences, Chinese Academy of Agricultural Sciences. All Rights Reserved