;

Gene Information

Basic Gene Information

ID source chrom start end strand CDS length exon number gene ID visualization
5908 irgsp1_rep chr02 6637973 6639828 + 1533 1 Os02g0218800

Gene Categorization (Help)

Core gene Yes
Candidate core gene No
Distributed gene No
Subspecies-unbalanced gene No
Indica-dominant gene No
Japonica-dominant gene No
Subspecies-specific gene No
Indica-specific gene No
Japonica-specific gene No
AUS-specific gene No
ARO-specific gene No
Subgroup-unbalanced gene No
Indica-subgroup-unbalanced gene No
Japonica-subgroup-unbalanced gene No
Random gene No
Gene age PS1

Gene Family

GF959 Core Gene Family

Gene Distribution (Help)

This gene presents in all high-quality rice accessions.

Gene Presence Frequency

The information about subspecies and subgroups.

Gene Ontology

GO:0000096sulfur amino acid metabolic process
GO:0000165MAPK cascade
GO:0005506iron ion binding
GO:0005623cell
GO:0005739mitochondrion
GO:0006546glycine catabolic process
GO:0006569tryptophan catabolic process
GO:0006612protein targeting to membrane
GO:0006636unsaturated fatty acid biosynthetic process
GO:0006733oxidoreduction coenzyme metabolic process
GO:0006766vitamin metabolic process
GO:0006952defense response
GO:0008652cellular amino acid biosynthetic process
GO:0009072aromatic amino acid family metabolic process
GO:0009106lipoate metabolic process
GO:0009108coenzyme biosynthetic process
GO:0009117nucleotide metabolic process
GO:0009416response to light stimulus
GO:0009507chloroplast
GO:0009534chloroplast thylakoid
GO:0009535chloroplast thylakoid membrane
GO:0009579thylakoid
GO:0009595detection of biotic stimulus
GO:0009611response to wounding
GO:0009620response to fungus
GO:0009684indoleacetic acid biosynthetic process
GO:0009694jasmonic acid metabolic process
GO:0009695jasmonic acid biosynthetic process
GO:0009697salicylic acid biosynthetic process
GO:0009753response to jasmonic acid
GO:0009862systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009867jasmonic acid mediated signaling pathway
GO:0009941chloroplast envelope
GO:0009978allene oxide synthase activity
GO:0010200response to chitin
GO:0010287plastoglobule
GO:0010310regulation of hydrogen peroxide metabolic process
GO:0010363regulation of plant-type hypersensitive response
GO:0015994chlorophyll metabolic process
GO:0016020membrane
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016836hydro-lyase activity
GO:0019216regulation of lipid metabolic process
GO:0019288isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
GO:0019373epoxygenase P450 pathway
GO:0019748secondary metabolic process
GO:0019761glucosinolate biosynthetic process
GO:0019825oxygen binding
GO:0020037heme binding
GO:0031348negative regulation of defense response
GO:0031407oxylipin metabolic process
GO:0031408oxylipin biosynthetic process
GO:0042742defense response to bacterium
GO:0043900regulation of multi-organism process
GO:0044272sulfur compound biosynthetic process
GO:0047987hydroperoxide dehydratase activity
GO:0050832defense response to fungus
GO:0055114oxidation-reduction process

CDS(Coding DNA Sequence)

Protein Sequence

If you don't know how to start, examples about how to use this website are provided. If you need further help, feel free to contact us.

Copyright © 2015-2018 The laboratory of computational genomics and metagenomics in Shanghai Jiao Tong University. Institute of Crop Sciences, Chinese Academy of Agricultural Sciences. All Rights Reserved