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Course information

Time and location

Wednesday 12:55 - 15:40

Room 305, Chen Ruiqiu Building

Office Hour

Wednesday 12:30PM-1:30PM

Room 221, Buidling 4, School of Life Sciences

Syllabus

Week Date Lecturer Topics Labs & Guides
1 Feb. 27 Chaochun Wei Introduction to Omics Big Data Lecture materials: Labs:
2 March 6 Chaochun Wei
  • Chapter 1: Probability, statistics and Information Theory
  • Chapter 2: Algorithm Complexity Analysis
  • Chapter 3: Dynamic Programming
Lecture materials: Homework 2:
3 March 13 Chaochun Wei
  • Chapter 4: Sequence Comparison
  • Chapter 5: Sequencing Technologies
Lecture materials: Homework 3:
4 March 20 Chaochun Wei
  • Chapter 6: Hidden Markov Model
  • Chapter 7: Gene Prediction
Lecture materials: Homework 4:
5 March 27 Chaochun Wei
  • Chapter 8: Multiple Sequence Alignment
Lecture materials: Project 1:
6 April 2 Chaochun Wei
  • Chapter 9: Metagenomics
  • Chapter 10: Pan-genomics
Lecture materials:

17

June 17 - 24

  • Final Exam

 Please downlowd the final exam here:
  • Go top

    • Paper list for student presentations

    If you have a paper that you want to be included in this list, please contact Dr. Wei at ccwei@sjtu.edu.cn.

    Links

    New homework submit system

    You can go the above webpage to submit your homework. Please contact TA in case you forget your username or password.


    No SSH? Download this SSH.zip file.
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    References:

     

    ©2019 Chaochun Wei